Highly Pathogenic Avian Influenza (HPAI) H5N1 HA clade prediction
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Search Segment Database By:
Host(s)
Continent(s)/Countries
Clade(s)
Any
Avian
Blow fly
Cat
Civet
Environment
Human
Leopard
Mink
Stone marten
Swine
Tiger
Any
Africa
Antartica
Eurasia
North America
Oceania
South America
Any
0
Outliers
1
2.1.1
2.1.2
2.1.3
2.2
2.3.1
2.3.2
2.3.3
2.3.4
2.4
2.5
3
4
5
7
8
9
Year From
-
To
-
Text (e.g., Nigeria)
Date Processed:
YYYY
-
MM
-
DD
-
-
Total Results: 1753
< 1
A/chicken/Iran/53-3/2008
2.2
FJ445017
Avian
Iran
2008
2008-11-19
Yes
New Sequence!
A/Daurian starling/Hong Kong/1532/2007
CY036181
Avian
Hong Kong
2007
2008-11-14
No
Did not meet Thresholds!
A/Japanese white-eye/Hong Kong/737/2007
2.3.4
CY036077
Avian
Hong Kong
2007
2008-11-14
Yes
New Sequence!
A/Thailand/16/2004
1
EU268219
Human
Thailand
2004
2008-11-14
Yes
New Sequence!
A/black-crowned night heron/Hong Kong/659/2008
CY036229
Avian
Hong Kong
2008
2008-11-14
No
Did not meet Thresholds!
A/blue magpie/Hong Kong/1993/2007
2.3.4
CY036109
Avian
Hong Kong
2007
2008-11-14
Yes
New Sequence!
A/chestnut munia/Hong Kong/2442/2007
2.3.4
CY036141
Avian
Hong Kong
2007
2008-11-14
Yes
New Sequence!
A/common buzzard/Hong Kong/9213/2007
CY036221
Avian
Hong Kong
2007
2008-11-14
No
Did not meet Thresholds!
A/common kestrel/Hong Kong/2372/2007
2.3.4
CY036125
Avian
Hong Kong
2007
2008-11-14
Yes
New Sequence!
A/common magpie/Hong Kong/5052/2007
CY036173
Avian
Hong Kong
2007
2008-11-14
No
Did not meet Thresholds!
A/crested goshawk/Hong Kong/458/2007
2.3.4
CY036061
Avian
Hong Kong
2007
2008-11-14
Yes
New Sequence!
A/great egret/Hong Kong/807/2008
CY036237
Avian
Hong Kong
2008
2008-11-14
No
Did not meet Thresholds!
A/grey heron/Hong Kong/1046/2008
CY036245
Avian
Hong Kong
2008
2008-11-14
No
Did not meet Thresholds!
A/grey heron/Hong Kong/3088/2007
CY036213
Avian
Hong Kong
2007
2008-11-14
No
Did not meet Thresholds!
A/house crow/Hong Kong/1203/2007
2.3.4
CY036101
Avian
Hong Kong
2007
2008-11-14
Yes
New Sequence!
A/house crow/Hong Kong/5288/2007
CY036189
Avian
Hong Kong
2007
2008-11-14
No
Did not meet Thresholds!
A/house crow/Hong Kong/719/2007
2.3.4
CY036069
Avian
Hong Kong
2007
2008-11-14
Yes
New Sequence!
A/little egret/Hong Kong/8550/2007
CY036197
Avian
Hong Kong
2007
2008-11-14
No
Did not meet Thresholds!
A/little egret/Hong Kong/8863/2007
CY036205
Avian
Hong Kong
2007
2008-11-14
No
Did not meet Thresholds!
A/long-tailed shrike/Hong Kong/2762/2007
2.3.4
CY036157
Avian
Hong Kong
2007
2008-11-14
Yes
New Sequence!
A/magpie robin/Hong Kong/1097/2008
CY036253
Avian
Hong Kong
2008
2008-11-14
No
Did not meet Thresholds!
A/magpie robin/Hong Kong/1897/2008
CY036261
Avian
Hong Kong
2008
2008-11-14
No
Did not meet Thresholds!
A/peregrine falcon/Hong Kong/1143/2007
CY036093
Avian
Hong Kong
2007
2008-11-14
No
A/peregrine falcon/Hong Kong/2142/2008
CY036269
Avian
Hong Kong
2008
2008-11-14
No
A/peregrine falcon/Hong Kong/5211/2006
CY036045
Avian
Hong Kong
2006
2008-11-14
No
A/red-billed starling/Hong Kong/4925/2007
CY036165
Avian
Hong Kong
2007
2008-11-14
No
A/scaly-breasted munia/Hong Kong/2433/2007
CY036133
Avian
Hong Kong
2007
2008-11-14
No
A/scaly-breasted munia/Hong Kong/2572/2007
CY036149
Avian
Hong Kong
2007
2008-11-14
No
A/scaly-breasted munia/Hong Kong/45/2007
CY036053
Avian
Hong Kong
2007
2008-11-14
No
A/silver-eared mesia/Hong Kong/2065/2007
CY036117
Avian
Hong Kong
2007
2008-11-14
No
A/white-backed munia/Hong Kong/828/2007
CY036085
Avian
Hong Kong
2007
2008-11-14
No
A/Muscovy duck/Vietnam/NCVD-11/2007
CY030319
Avian
Viet Nam
2007
2008-11-08
No
Did not meet Thresholds!
A/Muscovy duck/Vietnam/NCVD-22/2007
2.3.4
CY030399
Avian
Viet Nam
2007
2008-11-08
Yes
New Sequence!
A/Muscovy duck/Vietnam/NCVD-23/2007
1
CY030407
Avian
Viet Nam
2007
2008-11-08
Yes
New Sequence!
A/Muscovy duck/Vietnam/NCVD-29/2007
1
CY030438
Avian
Viet Nam
2007
2008-11-08
Yes
New Sequence!
A/Muscovy duck/Vietnam/NCVD-4/2007
CY030263
Avian
Viet Nam
2007
2008-11-08
No
Did not meet Thresholds!
A/Muscovy duck/Vietnam/NCVD-46/2007
2.3.4
CY030544
Avian
Viet Nam
2007
2008-11-08
Yes
New Sequence!
A/Muscovy duck/Vietnam/NCVD-5/2007
1
CY030271
Avian
Viet Nam
2007
2008-11-08
Yes
New Sequence!
A/chicken/Vietnam/NCVD-10/2007
1
CY030311
Avian
Viet Nam
2007
2008-11-08
Yes
New Sequence!
A/chicken/Vietnam/NCVD-15/2007
CY030343
Avian
Viet Nam
2007
2008-11-08
No
Did not meet Thresholds!
A/chicken/Vietnam/NCVD-20/2007
2.3.4
CY030383
Avian
Viet Nam
2007
2008-11-08
Yes
New Sequence!
A/chicken/Vietnam/NCVD-21/2007
CY030391
Avian
Viet Nam
2007
2008-11-08
No
Did not meet Thresholds!
A/chicken/Vietnam/NCVD-24/2007
CY030415
Avian
Viet Nam
2007
2008-11-08
No
Did not meet Thresholds!
A/chicken/Vietnam/NCVD-3/2007
CY030255
Avian
Viet Nam
2007
2008-11-08
No
Did not meet Thresholds!
A/chicken/Vietnam/NCVD-40/2007
2.3.4
CY030501
Avian
Viet Nam
2007
2008-11-08
Yes
New Sequence!
A/chicken/Vietnam/NCVD-41/2007
2.3.4
CY030509
Avian
Viet Nam
2007
2008-11-08
Yes
New Sequence!
A/chicken/Vietnam/NCVD-42/2007
2.3.4
CY030515
Avian
Viet Nam
2007
2008-11-08
Yes
New Sequence!
A/chicken/Vietnam/NCVD-44/2007
2.3.4
CY030531
Avian
Viet Nam
2007
2008-11-08
Yes
New Sequence!
A/chicken/Vietnam/NCVD-45/2007
2.3.4
CY030538
Avian
Viet Nam
2007
2008-11-08
Yes
New Sequence!
A/duck/Vietnam/NCVD-1/2007
1
CY030239
Avian
Viet Nam
2007
2008-11-08
Yes
New Sequence!
< 1